GgaEX0003903 @ galGal4
Exon Skipping
Gene
ENSGALG00000003018 | SCARB1
Description
scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:HGNC:1664]
Coordinates
chr15:4508303-4511558:+
Coord C1 exon
chr15:4508303-4508497
Coord A exon
chr15:4509690-4509838
Coord C2 exon
chr15:4511401-4511558
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGACCCTCCTTTTTCCTCAGGAC
3' ss Score
11.37
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CCCCGCTCCGCTCCGCCGTACGGCCCCGCCGGGCCCGGGGCATAAAGCGGCGGCGGGCGGCGCGCTCTGCGAGCCATGGTCGCGGCCGGGCGCAGGGTGGCGGTGGGGCTGGGGGCGGTCGGGGCCGTTTGCCTGCTGCTGGGCGGCTGCCTGCTGCTGGCGGGGCCCGCCATCGTCAAGGAGCAGGTCCTCAAG
Seq A exon
GACTCACTTCATCTCAAGTACGTGACCTTCTCATCTTCCACATGATCCGAGGGATCACAAATTCTTACGCAGCTTAAAGTCAAATGGAAGGCAAACAATGGAGTGATGTGCAGAGCCTTGCTGAGACTCCTGGGGCTGTGTTTGGAGCG
Seq C2 exon
AATGTGAGGATTGACCCCAGCAGCATCTCCTTCAACATGTGGAGGGACATCCCTGTTCCTTTTTATCTGACGGTGAACCTCTTTGAAGTGCAGAACCCCCAAGAGGTCCTCCAGGGAGCGAAGCCAAAGGTGAACCAGCGTGGACCGTATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003018_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0113016=CD36=PU(6.2=66.7)
A:
NO
C2:
PF0113016=CD36=FE(11.5=100)
Main Inclusion Isoform:
ENSGALT00000004770fB431
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTTGCCTGCTGCTGG
R:
CGGTCCACGCTGGTTCAC
Band lengths:
218-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]