GgaEX0003916 @ galGal3
Exon Skipping
Gene
ENSGALG00000003021 | F1NIT6_CHICK
Description
NA
Coordinates
chr10:4572039-4574640:-
Coord C1 exon
chr10:4573809-4574640
Coord A exon
chr10:4573429-4573540
Coord C2 exon
chr10:4572039-4572200
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTATTTATGCTTTCTTCTAGAAG
3' ss Score
8.22
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
TACCACTTTTTTACACGTTGTTTCTCATCATTCCTTGTATTGGACTTTCTTTTCTAACTGTCCTCGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAAATTTCCCTTTGCACTTCAGTCCTGGTATCTCTGACTGTTTTTCTTCTTGTCATTGAAGAGATTATTCCATCGTCTTCTAAAGTTATCCCACTTATAGGAGAATACTTGGTGTTTACTATGATATTTGTGACATTGTCCATTGTGATAACTGTCTTTGCTATCAATATTCATCACCGTTCTTCATCTACACACAATGCCATGGCACCTTGGGTTCGCAAGATATTTCTTCACAAACTTCCCAAGCTGCTGTGCATGAGAAGTCATGTAGATAGATACTTTGCTCAGAAGGAGGAAAAAGGAAACATGAGTGGATCAGAATCGTCTAGAAACACCTTGGAAGCAGCTCTAGACTCTATCCGATATATCACAAGGCATGTTATGAAGGAAAATGAAGTTCGTGAG
Seq A exon
AAGTCCATGTTGTTGTTAATCAAATATTTTCAGAGACACATGGCTGTTACAAGAGCACGTACAGTAACTGTTACCTGCAGTGCTGCTGAATGTTGTTTTCAGAATGAAAGAA
Seq C2 exon
GTTGTTGAAGACTGGAAATTTATTGCTCAGGTGCTTGATCGAATGTTCTTATGGGCCTTTCTTCTGGTTTCAATAATTGGATCACTTGTGTTATTTATTCCTGTTATTCATAAATGGGCAAGTATAATAGTACCTGTGCATATAGGCAGTACAAATACGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=48.9),PF0293211=Neur_chan_memb=PU(54.2=14.0)
A:
PF0293211=Neur_chan_memb=PD(16.2=81.6)
C2:
PF0293211=Neur_chan_memb=PD(43.1=57.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTTCCCAAGCTGCTGT
R:
TGAAACCAGAAGAAAGGCCCA
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event