GgaEX0004167 @ galGal3
Exon Skipping
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7566246-7567758:+
Coord C1 exon
chr17:7566246-7566406
Coord A exon
chr17:7566905-7567035
Coord C2 exon
chr17:7567675-7567758
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCCTAACTCTAGGGA
3' ss Score
10.9
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCAGAAGAAATCACTTTGTTACTGCAGGATATAAGACGAGACACCAGCCATCTTGATAGAGTTCTGTCCCTAATGGAAATTGGAGAAAACAGTTCTTTGCCTTTATTCCCAGTTTTATCTATGATGCTACAGATTCAGCCCAGCATGAGAACCACAGCAAA
Seq A exon
GGATCTGATCGATGTGCCATTTATTGGGGAATGTCTGATTGTTGCTAGTTCATCTGTAATAAAACAGAAAAAGTCTTTGGCTTCCTGTGTAATAGATATGTTCCTTGAGGGAGGAATCGGAAGCATTCTAG
Seq C2 exon
AATTCATGCAAGCTTTCTGGGATGTAGAAGAAGCACAGGCTAAAGCCATGCAACACCTGGCCCACTTTGTAGGAGATAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.6=100)
A:
PF0006920=Pkinase=PD(3.0=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAATCACTTTGTTACTGCA
R:
TTTTATCTCCTACAAAGTGGGCCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]