GgaEX0004289 @ galGal4
Exon Skipping
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4745681-4749433:-
Coord C1 exon
chr8:4747072-4749433
Coord A exon
chr8:4746253-4746342
Coord C2 exon
chr8:4745681-4745889
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACAAAGGCTGGGTTTTCCAGGTT
3' ss Score
3.23
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
AGACAAAGGCCTGCTCGGCCTCCAAGGCAAGATAAGCCACCACGCTTCAGGCGCCTAAAAGAGAGAGAGGCTGCTTCAAAGATCAATGAGGCAGTAACCAGCTCATCAACTACTGCTGCAGTCACTAATGTGGTTACTGAGCCCTCCAACACCGCTCTGGATGTTTCGGGAAGTAAGACACCAGACTTGTCTAATCAGAATTCTTCAGACCAGGCAAACGAGGAGTGGGAAACAGCCTCAGAGAGCAGCGATTTTAATGAGAGGCGTGAGAGGGATGAGAAGAAAACAGCAGATATAGCAGCACAGGTTGCTGCAAAAGCAGGAGAAAACACTGGAGCTCCAAAAAGAGAAATAGCTAAGAGAAGTTTCTCTAGTCAGCGGCCTGGAATAGACCGTCAAAACAGACGTGGTAACAGTGGGCCAGCTAAACCAGGGAGGACCTTCTCAGGGCCTAGGAGTGACAGGCGGAGTGGTCCTCCACCCAGAAGTGGAAAAAGAGG
Seq A exon
GTTCCACAGCAAAGCCAGAATGTTTCAAGTCTCTGACTCTGATGGCTGCAGAGAGCTTCTGGCAAGGGAGCCTGTGAAACATTTCATACT
Seq C2 exon
GCCATTTGAAGACCAGACAGCAAGCGTGCCTGGTGTTGATCCCAGCAACAACAACTCTTTGCATCAGGAAGAAGGAGGTGTTAATGCAGCAGGACAGAAGACCACCAAGGATGCAAGTGGCAAAAAGAGAGAGGAACCTAAAGCTGGTCCAAAGAAGCCTAAGGAAAAAGTGGATGCTTTGTCCCAATTTGATCTTAATAATTATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCTCAGGGCCTAGGAG
R:
CTTGGTGGTCTTCTGTCCTGC
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]