GgaEX0004870 @ galGal3
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
NA
Coordinates
chr17:6918779-6948507:-
Coord C1 exon
chr17:6948157-6948507
Coord A exon
chr17:6946114-6946353
Coord C2 exon
chr17:6918779-6918918
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTATTCGCGTGCAGTCA
3' ss Score
7.38
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CGTCCCCGCAGCGCCTCCCTCAGGGCCGGGCCCCGCCCGTGGCTGCGCTTCCCGAGGCGGCCGCCAGGCGGCGCTGCGTCCCGGCCCGGCGCGCGTGTGCGTGTGTGGCGGGAGCCCCCGGGCCGCCTCTTCCCCTCGCGGCCCGGCGGAGCTGGGCGGGGGGCGGGAGCGCTGCCTGCCTGCCTGCCGAGCCCCAGGGGCCGCCGCGGCGCCTTTCCCGGATCGCGGCCGGCCGGCGGCAGCGGGAGGAGGCGGCGGTGGCGGCGCCGCGGCCGCTCGCTGGCTCCTGGCGCGGCCGGGCCTGAGCGCCGAGCCCCGGCTCCGACATGTCCGGCAAGATCGAGAAAGCAG
Seq A exon
TCAATAACCCTGTGAGAATAGTAAATAGAGCTCCACCCCAGCGAAGCAGCGTGAAGAGTTCAAACGCTGGAAGATGACCCTGTAGACACACACAAACGCAGTGCTGTTCCGTATACAATAGAACAGAAAGGCCAAAAATACCCTACCAAACCCATACGCTGCGCAGCGTAGAGACCCGGCCTTGCAACACACTGAACTCCCATTGAAGAACTCAAGACATCATGCAGGATCCGTGCCCAG
Seq C2 exon
ATTCCGAGCGCTCCCATCTCTCCTCGTTCACTATGAAGCTGAAGGGCAAGTTTCATTCACCAAAAATAAAGAGAACTCCTTCCAAGAAGGGAAAGCAAGCTGACCTGACAGTGAAAACACCAGAGAAGTCAGCGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.833 A=1.000 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACATGTCCGGCAAGAT
R:
TTTGTTCGCTGACTTCTCTGGT
Band lengths:
172-412
Functional annotations
There are 0 annotated functions for this event