GgaEX0005467 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:6066540-6068528:+
Coord C1 exon
chr10:6066540-6066669
Coord A exon
chr10:6067367-6067397
Coord C2 exon
chr10:6068324-6068528
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCATTATTTTTTAGAGA
3' ss Score
9.96
5' ss Seq
TATGTAAAT
5' ss Score
-0.49
Exon sequences
Seq C1 exon
GGTCCCAGTACCCAGTTTTCCACTGTGTCAACAGAGTCACACATGAGGAAGTTCCTGAGAATTACTGTGACAGCAGCACCAAACCTATCCCAGAAGAGGAGGCCTGCAACATCTTCCCATGTCCAGCTTT
Seq A exon
AGATCAATATCAGGACTATAAACAGAGATAT
Seq C2 exon
CTGGGACATAGGGGAATGGTCTGAGTGCAGCAAAACGTGCGGCCTTGGTATGCAGCATCGACAGATCTTATGTAGGCAAATATATGCCAACCGCACCTTGACAGTGCAGCAATACCGCTGTCATCACCTGGAGAAACCAGAGACCACCAGCACTTGCCAGCTGAAGATCTGCAGTGAATGGCAGATTAGAACAGAGTGGACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'25-28,'25-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=81.2),PF0009014=TSP_1=PU(17.5=14.5)
Main Inclusion Isoform:
ENSGALT00000006501fB582
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGCAGCACCAAACCTA
R:
TGTCGATGCTGCATACCAAGG
Band lengths:
127-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]