GgaEX0005527 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5715021-5716325:+
Coord C1 exon
chr17:5715021-5715134
Coord A exon
chr17:5715889-5715977
Coord C2 exon
chr17:5716247-5716325
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATTTACTTGTCCCCCACCAGCCC
3' ss Score
6.39
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq A exon
CCCACCTGTCAAACATGCTGCTGCAAAACCAAAGCAAGTAACTCACTGCCAAACCCTGCTCTGGGGAGAATCACTTGAGACAGTTCCAG
Seq C2 exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.226 C2=0.019
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(42.7=100)
A:
PF0044324=UCH=PD(27.4=74.2)
C2:
PF0044324=UCH=FE(29.2=100)
Main Inclusion Isoform:
ENSGALT00000006585fB592
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAATGTGGTGGTCTGGT
R:
TGTGCATAGCCTCGGAACATG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]