GgaEX0005623 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5470937-5471998:-
Coord C1 exon
chr15:5471837-5471998
Coord A exon
chr15:5471479-5471580
Coord C2 exon
chr15:5470937-5471155
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTTCTTCTCTTCAGGCT
3' ss Score
10.02
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTCTTCGAGACCTGCTGTTATCAGGGTGCTCATGGATAGCAGTGTCAGCACTTTGTAGTTCCAGCTGTCCTTTACTCCGAACTCTGGACGTGCAGTGGGCAGAAGGACTGAAAGACGCTCAGATGAGAGACCTCCTGTCACCGCCCACAGATAACCGGCCAG
Seq A exon
GCTGCAACGGGTGTACTTTAGAGAGTATGGAAACACTTTCTTCCAGTTCAGGGAAGGAGCAGTTCTGTGGGTCATGCCACATTCGCCCGGATATCAGCTCAG
Seq C2 exon
GTCAGATCGACAACCGGAGTAAACTACGGAACATCGTTGAACTGCGCTTGGCCGGCCTGGATATTACCGATGCGTCTTTGCGGCTGATCATAAGGCACATGCCTCTGCTCTCCAAACTCAATCTTAGTTACTGTAACCACGTGACAGATCAGTCTATTAACCTGCTGACCGCGGTTGGAACTACCACGCGGGATTCATTAACGGAAATTAATTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-13/13=12-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000006725fB605
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCAGATGAGAGACCTCC
R:
TCCGTTAATGAATCCCGCGTG
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]