GgaEX0005624 @ galGal3
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5615714-5620557:-
Coord C1 exon
chr15:5620479-5620557
Coord A exon
chr15:5616269-5616331
Coord C2 exon
chr15:5615714-5615760
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCATTTATCTCTCAATTAGCCT
3' ss Score
4.49
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTTTACTTTTGAGTATGTGCAAAGAGAAGCTCTCAGAGTTCCACTTATCTTCAGAAATAAGGATGGACTGGGAATTAA
Seq A exon
CCTAAATTGAATTGAACAGCTACTTCCGTACCCATCAGATATGTCTGGGTTGTCTTCTGCCAG
Seq C2 exon
AATGCCTGACCCGGATTTCACCGTCAGAGATGTGAAGCTATTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225-'6-6,'6-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(8.4=100)
A:
NO
C2:
PF136211=Cupin_8=FE(5.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTTTTGAGTATGTGCAAAGAGA
R:
CCACTAATAGCTTCACATCTCTGACG
Band lengths:
124-187
Functional annotations
There are 0 annotated functions for this event