GgaEX0005699 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12118808-12125738:+
Coord C1 exon
chr6:12118808-12118843
Coord A exon
chr6:12120143-12120205
Coord C2 exon
chr6:12125706-12125738
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTCTCTTTCTCAGGGT
3' ss Score
11.67
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGAGACCCTGGGATTCAAGGATACCCTGGCAGAAAG
Seq A exon
GGTGAGGCTGGCATGTCAGGCCTGCCTGGTGCACATGGCCTCCCTGGAGCTACTGGCCCCAAG
Seq C2 exon
GGTGCTCCTGGGACAGCCACGGCAGGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX1-1/4=C1-4
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=FE(11.6=100)
A:
PF0139113=Collagen=FE(25.6=100)
C2:
PF0139113=Collagen=FE(10.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCTGGGATTCAAGGA
R:
CTTCATCCCTGCCGTGGC
Band lengths:
69-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]