GgaEX0006048 @ galGal3
Exon Skipping
Gene
ENSGALG00000004490 | FAM73B
Description
NA
Coordinates
chr17:6013697-6015526:+
Coord C1 exon
chr17:6013697-6013731
Coord A exon
chr17:6014757-6014920
Coord C2 exon
chr17:6015286-6015526
Length
164 bp
Sequences
Splice sites
3' ss Seq
AATATATATTGTTTTTGTAGCTC
3' ss Score
6.27
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
GGGCGCCGAGCGGGGCCGTGCGCCCGCGGGTTGCG
Seq A exon
CTCTGTCCTTGACATGAAGCAGGGCCCTGCTTCCTGGCTTCCAGCACAGCCAGGAAAGCTCTGCTAAACTCAGCTTACTTTGAAACCTCTTGGGAGAAACAGCCTCTGCTTCGTGGCTCTTTACAGTGACAGAATCAAGGGCGAGCAGAGTTTTGCTGATTAAG
Seq C2 exon
GGTTGCTGGATGAAGGCTGGCTCCAGGACACTGAGCTCGATGTCAGATGGAAGCTGGATTTCCTTGTGAGTGGCTCGTGCAGCATCCATCCAAAAGTGTCCTTCCCCTTCGTGACTCCTGGAGGTGCTGAGGTCATCCTTTAGCCATGGCATTTAGAAGGACCGAGGGAATGTCCATCATCCAGGCCTTGGCAATGACCGTGGCGGAGATCCCCGTGTTTGTGTACACAACGTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]