GgaEX0006113 @ galGal4
Exon Skipping
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9245583-9250673:+
Coord C1 exon
chr11:9245583-9245697
Coord A exon
chr11:9248056-9248160
Coord C2 exon
chr11:9250539-9250673
Length
105 bp
Sequences
Splice sites
3' ss Seq
GATTGTTGTTGTCTCTTTAGATG
3' ss Score
8.74
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAAGTAAGTCTTCAGTTCAGAAACTGTACAGATGTGATGTATGTGACTACACCAGCACAACTTACGTTGGCGTACGAAATCACAGACGAATCCATAACTCTGATAAGCCATACAG
Seq A exon
ATGTCGAGTATGCGACTTCGCCACCACAAATATGAATAGTTTGAAATGCCATATGAGGCGTCACCCCCAGGAGCATCAGGCAGTGCAGCTAATGGAACAGTACAA
Seq C2 exon
GTGTTCTCTCTGTGGATATGTATGTAGCCATCCCCCTTCCCTGAAGTCCCACATGTGGAAACATGCAAGTGACCAAAATTATAACTACGAACAAGTCAACAAGGCTATTAACGATGCAATTTCACAAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.128 A=0.278 C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(57.7=38.5)
A:
PF134651=zf-H2C2_2=PD(38.5=27.8)
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAAACTGTACAGATGTGA
R:
GCTGCTTTGTGAAATTGCATCG
Band lengths:
235-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]