GgaEX0006183 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7172292-7175975:-
Coord C1 exon
chr8:7175901-7175975
Coord A exon
chr8:7174521-7174574
Coord C2 exon
chr8:7172292-7172417
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATGTTTGCTTTTACAATAGGAT
3' ss Score
7.37
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GCATACTCTGTCTACGATGAAGACATTGGCTATTGCCAGGGACAGTCCTTCCTTGCAGCTGTGCTACTGCTTCAT
Seq A exon
GATATTAAACTGAAATAATCAGAGAAAGGGGGGAAGGGAAGCAGTGTCACTCAT
Seq C2 exon
ATGCCGGAGGAGCAGGCCTTCTGCGTGTTTGTGAAAATTATGTATGACTATGGCTTGCGGGACCTCTACAGAAATAACTTTGAAGATCTCCATTGCAAGTTTTTCCAGCTGGAGAAGCTAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'25-41,'25-40,26-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=PD(3.1=50.0)
C2:
PF0056613=RabGAP-TBC=FE(20.1=100)
Main Inclusion Isoform:
ENSGALT00000007287fB662
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTTCCTTGCAGCTGTG
R:
TCTCCAGCTGGAAAAACTTGCA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]