GgaEX0007173 @ galGal4
Exon Skipping
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7583793-7586588:+
Coord C1 exon
chr9:7583793-7583913
Coord A exon
chr9:7586039-7586233
Coord C2 exon
chr9:7586431-7586588
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGTCCTCTGCTCCTCTACAGTAA
3' ss Score
6.36
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAATAGATCGTAAAAAAGACCTTGTGAAACTCCAAGCAGGGGAATATGTTTCTCTTGGCAAAGTAGAAGCAGCTCTGAAGAATCTTCCGCTGGTAGACAACATTTGTGCATACGCAAGCAG
Seq A exon
TAACTGGATTTCTGCAGTTGAGAGGAAACTGAGGTAGGGAAGCTGCACACCTGTCTTCATACCAAGATGCAAAACATGAGGAGAGGCAGGGCGCATTGACATCGTGTGGGTACTGCTTCCCCAAAGCTTTGAGCATGAGGTACAGTGGAATATGCATATGGACAGCACACCTTGAAGCAATCCAGTTGCTGTAAG
Seq C2 exon
TTTCCATTCTTACGTCATTGGATTTGTTGTGCCAAATCAAAAGGAGCTTGCAGAACTAGCTCGAAAGAAAGGATTTAAAGGAACCTGGGAAGAAATCTGTAACAGTTCAGAGATGGAAAAAGAGGTACTGAAGGTGCTAGCTGAGGCTGCCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(2.3=26.8),PF131931=AMP-binding_C=PU(20.6=48.8)
A:
NO
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
ENSGALT00000008360fB775
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAAACTCCAAGCAGGGG
R:
GCCTCAGCTAGCACCTTCAGT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]