GgaEX0007478 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7925104-7934362:+
Coord C1 exon
chr12:7925104-7925174
Coord A exon
chr12:7932763-7932808
Coord C2 exon
chr12:7934287-7934362
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGTTTGTCTTGGCAGATC
3' ss Score
11.07
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ACTGGTAACTTTTTTGGGGAGGTTGAAGGGGCTGTGATGAACAAATTGCTAACAATGGGCTCCTTTAAGAG
Seq A exon
ATCTGTGCGCGCGGATCTGGCTGTGGGCGTGATTCTGCCAAAGATG
Seq C2 exon
AATTACACTTTATGACTACCAGGCCATGTGTAGAACAAACAAAGAGAGTAGCGACAGTGCCCATAGCTTACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGGGAGGTTGAAGGGG
R:
GTAAGCTATGGGCACTGTCGC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]