GgaEX0008042 @ galGal3
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:10058437-10077643:+
Coord C1 exon
chr5:10058437-10058542
Coord A exon
chr5:10071120-10071278
Coord C2 exon
chr5:10077511-10077643
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTGCTATACTTATTTTCAGTCT
3' ss Score
5.72
5' ss Seq
GTGGTTTGG
5' ss Score
-1.33
Exon sequences
Seq C1 exon
AAATTGTTTTCTTTGGGAGCTGGAGACCGACAACTGATACAGACTCCTCTACATGATAGCCTTCCTGTTACAGGCACCAGCGTGGCTCTTCTCTTTCAGCAGCTGG
Seq A exon
TCTCTTGGATACAATGTTGAACGATCACTTGGCCTTTTTGGCATCTAAAGCATCATCTTTCTGCATGGTCCTCTTGTGCTTTCCCACTTCCCCTGAAGCTGATTTGTGGAAAAGTCTTTGACCCATTCTGCGTCTTCTGAAGAACATGCAACATTCGTG
Seq C2 exon
GAATCCAAAATGTACTCAGCTTGTTCTGTGCCGTGCTTACAGAAAATAAAGTTCTCTTTCACTCAGCAAGTTTTCAGAGGCTCAGTGATGCCTGCAGAGCTCTGGAGTCTTTAATGTTTCCTCTCAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'5-11,'5-10,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.1=100)
A:
PF0214116=DENN=PD(2.1=28.6)
C2:
PF0214116=DENN=FE(24.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGTTTTCTTTGGGAGCTGGA
R:
TTTGAGAGGAAACATTAAAGACTCCA
Band lengths:
234-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]