GgaEX0008191 @ galGal4
Exon Skipping
Gene
ENSGALG00000005816 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:HGNC:973]
Coordinates
chr8:12769162-12775966:+
Coord C1 exon
chr8:12769162-12769495
Coord A exon
chr8:12771613-12771702
Coord C2 exon
chr8:12775927-12775966
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTAAATCAATGTAGATG
3' ss Score
5.93
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AATCAAGAATGATAGCTGCAGGGAAATTTTCAAGTCTTCCCAGAAATGTCCCAGTGAATGTGAACCATCAGTTCTCATTAGCATCGTCTATGGATCTTTTGACCACCAAGCCTTCACTAACTGAGCATCGCTCAGACTCCTTTCAAGACATCTCTATCCATGGCACACTCCCCAGGAAGAAGAAGGGAACAGTTAAAGTTAGGGCTTGTGATATGTTTAGCCATGTGGGAATGTTACCGTACACGAGAACACAAAGGCAACAGCCACCTTTTGTACAGGATGTCATAGAAGAGTACCCTCTACAAAATGGGAAGAGCAACAAACTCCACACCAG
Seq A exon
ATGGAAGGATTCTGGAGACAAATTGAAGAAGGCTTTTAATCCTATGTGGTCTCTATAGCAGTTCTGTCTGTCTAAGCAGCCATGCAACAG
Seq C2 exon
AGATCAGAATATTCCAGATCCTACTTTGGAGTATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=0.158 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009337fB883
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTTGTGATATGTTTAGCCA
R:
ACATACTCCAAAGTAGGATCTGGA
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]