GgaEX0008585 @ galGal3
Exon Skipping
Gene
ENSGALG00000006061 | RAP2C
Description
NA
Coordinates
chr4:3465682-3468502:-
Coord C1 exon
chr4:3468381-3468502
Coord A exon
chr4:3465920-3465998
Coord C2 exon
chr4:3465682-3465787
Length
79 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTTTAATAAAATAGATA
3' ss Score
3.74
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATAAAACTCAGAGGAAACTTGCACAGATGCTGCTTTGGAGAACTTTCAGCCCAGGTTGCAGAGCTGAGCCTTGGTAAACCTGTCTCTATTACAGCACATTGCCATACATCTAAGTGCATAAG
Seq A exon
ATACCTGTATTACCAAACTGGGGTGAACTGGTCTGTGTTCCATTTCTTCTAGAGCGGGACAAACAAGCAAGCCTCTTAC
Seq C2 exon
GCATTTCTGTGTGTGTAGGTGGCAATGGGTGCAGGTCCTGCTGCGGACATCTTACCGTGTCTCTGTAGCTGCTGTCCCTCGTGGTAACCCTACACTGGCCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006061-'11-8,'11-7,12-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTTCAGCCCAGGTTGC
R:
AGTGTAGGGTTACCACGAGGG
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]