GgaEX0008590 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3544987-3569768:-
Coord C1 exon
chr4:3569668-3569768
Coord A exon
chr4:3549651-3549799
Coord C2 exon
chr4:3544987-3545087
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTGCTGTTTACAGCCG
3' ss Score
8.67
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TTGCTGGGCTGGGATTTGGATAACGGGAGCGACCTTCCTCACCATGCAGCCCCACGGCAGCGCTTAGGGACGGGAAGGTGACGGATTTAAGAGAAGATGAG
Seq A exon
CCGTGCCAGCAGAGCTTCCGAACCACTCGTAAGCCCAGCAGAGCTGCTGTGTGATGCAGCCATGGCAGTACCTGACTTGGCACATGCTCTTGGGGCCCCAAATGAGCTTCTCGAATGTCACACAATGGAGTGAATGTCACCGTGGCTCG
Seq C2 exon
GTTGCTGAAAAGTGCCTTTCCTGAAGCCACCGCTGCTTGGATTTCTGTCTAGGGCTGCCTCTCTCTCCCCCCTTCGCCCCCTTTCTTTTTAATTTGGCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'2-2,'2-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGGCTGGGATTTGGAT
R:
AACGCCAAATTAAAAAGAAAGGGGG
Band lengths:
202-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]