GgaEX0008806 @ galGal4
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14072205-14073833:+
Coord C1 exon
chr8:14072205-14072305
Coord A exon
chr8:14073455-14073537
Coord C2 exon
chr8:14073758-14073833
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTCCCATTTTTTTTCCCAGTGT
3' ss Score
9.3
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGCCGGGCGGGAGTGAGGCCGTCGGTGAGGCGGGGGGGGTGGCTGGTGCCTTTCCAGCTGCGAGCTTGGGGTGCTTCACGTTGAGAGTATTGCTTTGGTAG
Seq A exon
TGTTTCCATATATTCAAGATTTTTTTTTCCCCTTCTGCTCCTCATACAATTTTCACAGTTTCTACACTTCTCTGTCATTAAAG
Seq C2 exon
GTTGCAAGTTAACTTTGCATGTTGAGTTTGGAAAGTTTTTATATCATCATGCTACTCCTCAGTATAAACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'3-2,'3-0,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGGCCGTCGGTGAG
R:
GTTTATACTGAGGAGTAGCATGATGA
Band lengths:
160-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]