GgaEX0008809 @ galGal4
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14075263-14078528:+
Coord C1 exon
chr8:14075263-14075363
Coord A exon
chr8:14075602-14075709
Coord C2 exon
chr8:14078470-14078528
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTGTATCCTTTTCAGTTT
3' ss Score
9.04
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCATGCTTTTTGTTTCACGAAGCCTCTGTTGCCGTGGCATTGGAGCGTACCAACTACAAACAAATTTACTTTCTAGGTCCATCAAGCTTTCAGCCTCTGAT
Seq A exon
TTTTTAAAGTCAGTTCTGCAGGAACGAGCTGAAAGGATTGCCTAATTGTTAGAGTGTTAGCCTGAGCTATAGGAGACTGATTCCTGCCAGCTTTATCACAGAACTTCG
Seq C2 exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009984fB955
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTTGTTTCACGAAGCCT
R:
CACACATTGCTATCAAGGCCT
Band lengths:
157-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]