GgaEX0008877 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6923503-6930413:-
Coord C1 exon
chr7:6930274-6930413
Coord A exon
chr7:6925214-6925415
Coord C2 exon
chr7:6923503-6923639
Length
202 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTAATTCTTTTTCAGATG
3' ss Score
11.56
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACCTCCAGAACTGGGTGGGCCTCCTCCAGGGAAAGCAGTTTTGTCTATGAATTGTCTGAGTTACGGTGTGATAAGAGTGGATACAGAAGAGAAGTTGTCTGTTTTAACTGTACAAGATGTCGGTCAGATTATGCCTGGAG
Seq A exon
ATGCGATGCTGTTGAGAGCCTGAAATGGTGGTAGATGCATTCTCTTGTATATCACACATGAAGCAGGAAAAGAAGGAGAAGCAAGATTACAGGCTCTACAGATACTGCAAAAGGAAAACCTTGCAGTAACACATGGCAGGGCAGAACTATGCCTGCTGTTAGAATGTATGTGTAGACTACCTATATCATGCATTGGTTACTG
Seq C2 exon
CTAATGTTTGTGTTGTGAAGGTGGATGGGACTCCTTACCTGTGTAAAGCTGATGAAGTTGGAGAAATATGTGTGAATTCAGGCGCAACTGGAATGGCTTATTTTGGCCTCCTCGGAATCACCAAAAATGTGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'28-32,'28-31,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.0=100)
A:
PF0050123=AMP-binding=PD(1.3=62.5)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACTGGGTGGGCCT
R:
ACACATTTTTGGTGATTCCGAGGA
Band lengths:
268-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]