GgaEX0008882 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6977824-6991538:-
Coord C1 exon
chr7:6991467-6991538
Coord A exon
chr7:6978622-6978834
Coord C2 exon
chr7:6977824-6977924
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTACCCATCCATTTACCAGGCA
3' ss Score
6.56
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGATATCACTCAGAAAGGCTATGAAAAGAAAAGAGCAAAGCTGTTAGCACGTTACATACCACTAATTCAAG
Seq A exon
GCATCTTCCGGAATGGGATATTTTCATTCCTGAAGGAAACTCTTCTCCATTGGAGCAACCGTTGTCCCTTCTGGTGCATCGCTGTGATACATCGCTTGGCCTAGGATCTTCTGGAGCTCTTCTTTCAACAGTGAAAAAGACAGAATACTCCTCTGGCTGAGAGAGGAGACCCATTGTGCCACTGTTTGCTTAGGCCATCCCTGTATTAAGAAG
Seq C2 exon
GTGCATATGAGTGCTCGTCAACTGTTAAACTTAAGATGGACCTAGGCAGGGTTGGTTTATCACTAGAATCCTCAAATCCTCCTGTACCTGTACAACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'4-5,'4-4,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATATCACTCAGAAAGGCTATGA
R:
TCTCGTTGTACAGGTACAGGAGG
Band lengths:
172-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]