GgaEX0008893 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6940434-6949026:-
Coord C1 exon
chr7:6948781-6949026
Coord A exon
chr7:6946844-6946987
Coord C2 exon
chr7:6940434-6940562
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATAACCTCCTTTTCTTCCAGTCC
3' ss Score
9.67
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ACACATCGTCAGCATCAGAAGATGAGGGCTCGTTGCGTCGGCAAGGGCGGATCACCTCCACTCGGTTCCAGAGCCATTCCAACGTAGAGCCCTGGCTTAACCGGGTTATACAGGGCTCGTCCACCTCATCCTCTGCATCTTCCACCTCATCTCATCCAGGAGGGAAACCTGCTGCTGCTTCCAGTACTGCTACTGCCACCGCTGCTGCCACGGTGCTTGCAGATCTCATGGCACACATCCAGCTAG
Seq A exon
TCCTTGGAGATGACATCCAGAGCAAGTTATTCCATCACCTTTCCAAGTACAGAGGTGAGGCTGCCTGGATCCTCCCTGTTACCCTGTTTGAAGACTGTGGAGTGACACTGACTTTCTTCCAGTCCTTAGGCACCATTCTCATGA
Seq C2 exon
ATAACCACTCAGCACCTCCTGATGTAACCACTGGTCTGTTGGAACACTTGCATCATGAGCGTCCACAAGTAGCATCAGTACGAGGAATTCCCAAAGGCTACAACAGCAGCATTTTGGAAACTGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'8-13,'8-11,9-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=0.000 C2=0.823
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCGGTTCCAGAGCCATTC
R:
TTGTGGACGCTCATGATGCAA
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]