GgaEX0009586 @ galGal4
Exon Skipping
Gene
ENSGALG00000006706 | USP6NL
Description
USP6 N-terminal-like protein [Source:RefSeq peptide;Acc:NP_001026011]
Coordinates
chr1:6004822-6010810:-
Coord C1 exon
chr1:6010710-6010810
Coord A exon
chr1:6008391-6008447
Coord C2 exon
chr1:6004822-6004911
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCTATTAAATGTCTTGTTAGGTC
3' ss Score
5.55
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTTGGAGGCCGCCGCTCCTGGGGCAGCAGAGCGGGGAAGTGCCGCTGGCGAGGAGGCGGACGGAGGCCCTGGGAGGAGGGAGAAGAGGAAGGCGAGCAAAG
Seq A exon
GTCAGATACTGGATTGGATACAAGGGTTAGCTCTCCAGGAAAAGAGAAAGATCAAAG
Seq C2 exon
GACATGTATACCTCTGAGAAACCTTCTCCAACAAGATACCTTGCTTCAACACCTGGTTTGGATTACATGCGAAGAAGTTTCCAGTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGCGGGGAAGTG
R:
AACCAGGTGTTGAAGCAAGGT
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]