GgaEX0009626 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:16014484-16015106:-
Coord C1 exon
chr5:16015006-16015106
Coord A exon
chr5:16014818-16014849
Coord C2 exon
chr5:16014484-16014661
Length
32 bp
Sequences
Splice sites
3' ss Seq
GAAATTTGATATTTTCACAGGCT
3' ss Score
5.11
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
TCCACAAAATGAAACTTCAATTAAACAAATTGAAGGCTGTTTCTGTCCTAATGGTACAATGCTGTTCGACTCTGGTGTGGATGTCTGTGTAAATACCTGTG
Seq A exon
GCTGTGTTGGATTGGATATGATACCAAGAGAG
Seq C2 exon
TTTGGAGAAAAGTTCACAGCAGACTGTCAGGACTGTGTTTGCCTGGAAGGTGGAAATGGCATTGTATGTGAACCTCACAAATGTCCTGAACAAAATAAGAAGAGTTGTTCTGGGAAAGGCTTCTATGAAGTCACTGTAGTCAACTCTGAAGATCCCTGCTGCCCCACTGTCACTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(60.7=100)
A:
PF0182612=TIL=PD(1.8=9.1),PF0009313=VWC=PU(13.0=81.8)
C2:
PF0009313=VWC=PD(84.1=96.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAATGCTGTTCGACTCTG
R:
ATGCCATTTCCACCTTCCAGG
Band lengths:
112-144
Functional annotations
There are 0 annotated functions for this event