GgaEX0009876 @ galGal4
Exon Skipping
Gene
ENSGALG00000006937 | P4HTM
Description
prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) [Source:HGNC Symbol;Acc:HGNC:28858]
Coordinates
chr12:11641691-11643582:-
Coord C1 exon
chr12:11643420-11643582
Coord A exon
chr12:11642037-11642267
Coord C2 exon
chr12:11641691-11641876
Length
231 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTCGTTCACTCTCAGCAG
3' ss Score
4.09
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
Exon sequences
Seq C1 exon
GCGTGCTGAGTTTGGAGGAGTTCAAGAGACTGAACATCCGTGACTTCCACAAGTACATGGGGAGCCAGAAAGTGAAGATGAGTGACGCGGTGCGCAACAGCCAGCACACGTGGCTGTACCAGGGCGAGGGCGCACACCAGGTCATGAGAGCCATACGGCAGAG
Seq A exon
CAGGGGCCCTGTGCTTTGCTAACTGTCCCCGAGGTCTGTAGCTGGTGTGCAGGAGTCCAGAGAAGCGCTGAGATGGCACATGAAGGCTCCAGGGACACCCACAGGAGGGATCTTTCTGAGCAAGCAAGGTCTTCATGAGAGCAGTCCTGCTGGAGATGCGCCCTTCGTTTTTGTTTTTTTGTTAACCTTGAGGAGGAGTTTCTGAGCTGATGCTGATGGTCTGACAGATCT
Seq C2 exon
GGTAATGCGCCTGACTCGCCTGCCCCCAGAGATTGTGGAGCACAGTGAGCCCCTGCAGGTGGTGCGCTATGACCAGGGGGGCCACTACCATGCCCACATGGACAGCGGCCCCGTCTTCCCCGAGACCGCCTGCAGCCACACCAAGCTGGTTGCCAACGAAAGCGCTCCCTTCGAGACCTCATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006937_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(10.5=20.0)
A:
NO
C2:
PF136401=2OG-FeII_Oxy_3=PU(30.1=69.8)
Main Inclusion Isoform:
ENSGALT00000011237fB1087
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGCCAGAAAGTGAAGA
R:
CGACATGAGGTCTCGAAGGGA
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]