GgaEX0011068 @ galGal3
Exon Skipping
Gene
ENSGALG00000007786 | DOK5
Description
NA
Coordinates
chr20:12219131-12224581:-
Coord C1 exon
chr20:12224446-12224581
Coord A exon
chr20:12219474-12219536
Coord C2 exon
chr20:12219131-12219251
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACCTCAGTTTCTGTTTCAGCTG
3' ss Score
6.68
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGTGCGACACAGGAGAAGGACTGTTCATCTTTCAGACACGAGATGGGGAAGCAATCTATCAGAAGGTTCACTCGGCTGCTCTGGCCATAGCAGAACAACACGAGCGCCTGTTGCAGAGCGTGAAAAATTCAATG
Seq A exon
CTGCTTGAGTTAGACCTCCCCGCAGGGGCAGCGGTGCTGGCACAGGAGCAGGGCAGCACGAAG
Seq C2 exon
CTTCAGATGAAGATGAGCGAGAGAGCAGTGTCCCTCAGCACCATGGTGCCCCTGCCCCGCAGTGCCTACTGGCAGCACATCACACGGCAGCACAGCACCGGCCAGCTCTATGGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0217412=IRS=PD(32.7=69.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATAGCAGAACAACACGA
R:
GTGTGATGTGCTGCCAGTAGG
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event