GgaEX0011544 @ galGal3
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
NA
Coordinates
chr5:24371961-24375484:+
Coord C1 exon
chr5:24371961-24372028
Coord A exon
chr5:24373879-24373942
Coord C2 exon
chr5:24375429-24375484
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCGCTCTTTTTGTTTTTCAGATG
3' ss Score
11.46
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
ATGATGCTCTTTGCCATCACTCACAGATGGATTGCTTTGCAAAGCAGATCTACTCACCCTCTGG
Seq C2 exon
TTCTCAGGTTTCTGGCACAGCTCAAATTCCTCCTCTCCCTCAGCCCCTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053-'5-4,'5-3,6-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.120 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTTGACAAGAACAACCGCT
R:
CTTTTCACAGGGGCTGAGGGA
Band lengths:
124-188
Functional annotations
There are 0 annotated functions for this event