GgaEX0011968 @ galGal3
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
NA
Coordinates
chr4:14205262-14206419:+
Coord C1 exon
chr4:14205262-14205378
Coord A exon
chr4:14205602-14205660
Coord C2 exon
chr4:14206258-14206419
Length
59 bp
Sequences
Splice sites
3' ss Seq
GATGTATCCTATTAATAAAGGTC
3' ss Score
2.96
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTCCCCCAGGTCCTGTGGGACTGCCTGGCTTGCCAGGAACTCCTGGAGTTTCTCTTCCTTCTGATATACGTGGGAGACCTGGGGATGCTGGCCATCCAGGACTTGATGGGAGTTCAG
Seq A exon
GTCTGTGAGCAATACTCATTTCACCCATTGTGATGCTGAAGACAGACTCAGGCACTAAG
Seq C2 exon
GTCTTCCAGGTCCTCCGGGACAACGAGGGCCCCCTGGACCAGCTTTTGACCAAGGTGACACAGGCAATCCAGGTTTCCCTGGTGTTCCTGGCTTGCGAGGTGGTAAGGGCGATGTGGGACCAACAGGTCCCATTGGACTCCCTGGCGTATCTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'40-41,'40-40,41-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=PU(27.4=42.5)
A:
PF0139113=Collagen=PD(1.7=33.3)
C2:
PF0139113=Collagen=PD(71.0=80.0),PF0139113=Collagen=PU(24.6=27.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCAGGACTTGATGGGA
R:
CTTACCACCTCGCAAGCCAG
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event