GgaEX0012008 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19100220-19103892:+
Coord C1 exon
chr12:19100220-19100348
Coord A exon
chr12:19102842-19102868
Coord C2 exon
chr12:19103772-19103892
Length
27 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTCTTACAAACAGACA
3' ss Score
8.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
Seq A exon
ACACAGATCTTGACCAGAATAAAAGAG
Seq C2 exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-8/17=7-9
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTTTCTTCAGTTCCCCA
R:
GGCTTGGCATTAACCAGTTGC
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]