GgaEX0012051 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12527873-12529347:+
Coord C1 exon
chr1:12527873-12527967
Coord A exon
chr1:12529066-12529155
Coord C2 exon
chr1:12529228-12529347
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCCTCTTTTTGACAGGGT
3' ss Score
7.15
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TGATGAGAGAGGAAGTGAAGCAGAGTTCAGAGTGTTTCACATCATGAGTCGAATTCTGGAAGCTGCAAATGGCATGTGTATGCCTTTACCTCCTG
Seq A exon
GGTTGTGCTTGACAAGACTTAAAGATAAACTCATTTCCTTACTATGCTTAGAAGTTGAGGAGAGTGTTGGCTTTAGATACAGTAATGCAG
Seq C2 exon
GTTTTCACTCTCTACACTTGGGGCTTGGTGTTCGATGTCTCCCCCTTCATACTCTCCTGCACTATATTGACAATGGGGTTCTACATCTGACAGAAACCTGTGTCAGGAAACTGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'53-46,'53-45,54-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(27.8=100)
A:
PF149591=GSAP-16=PD(8.7=19.4),PF149591=GSAP-16=PU(5.4=9.7)
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Inclusion Isoform:
ENSGALT00000013530fB1354
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAATTCTGGAAGCTGCA
R:
TTCAGCAGTTTCCTGACACAG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]