GgaEX0012056 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12500946-12503729:+
Coord C1 exon
chr1:12500946-12501005
Coord A exon
chr1:12501675-12501718
Coord C2 exon
chr1:12503644-12503729
Length
44 bp
Sequences
Splice sites
3' ss Seq
CATGTTTATTTTTTTAACAGCTG
3' ss Score
9.16
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATCAAGGAGTATTTTAAGATGTGTCCAGTTCTACCCTGATGAAAATTTTAACTCAACA
Seq A exon
CTGGAATCACAGCTGGATATTTCTGTAAATGACAAACGAGTAAA
Seq C2 exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGAGTATTTTAAGATGTGTCCA
R:
TGTAAAAACCTGAAGATTCAAAGACT
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]