GgaEX0012164 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25825872-25844009:-
Coord C1 exon
chr5:25843975-25844009
Coord A exon
chr5:25836537-25836635
Coord C2 exon
chr5:25825872-25825980
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTTTGTGTCCCCAGACT
3' ss Score
10.09
5' ss Seq
TAAGTACGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
NAGCGCTTCACCGGCCTCAGGCTCTTCGGGCGCAC
Seq A exon
ACTCCACCTGCCCCACAAAGGTGTCCTCCCTTGTCTCCTTGGCAGCCAGCCCAGCCGATGGGGATCCCGGAGGATAAGGCACCGGCCAGCCGTGTATAA
Seq C2 exon
GAAAGCTATTGCCAAGTCCAGCCTCCAGCACATGGTAGCCCAGCCAAACCCCGTGCCAGCCCTGAGGAGTGAGTCAGAGAGGCAGATACGCAGCACTGTGGACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGGCTCTTCGGGC
R:
CAGTCCACAGTGCTGCGTATC
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]