GgaEX0012338 @ galGal4
Exon Skipping
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10471388-10484013:+
Coord C1 exon
chr1:10471388-10471692
Coord A exon
chr1:10477274-10477356
Coord C2 exon
chr1:10483848-10484013
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTTCACTTTTTGCATTCTAGCCA
3' ss Score
6.64
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGCTCCCGGGGAGGGGAGGGGGAGAGGAGGCAGAGGATATGTTGTTGAACAGTTTCTTACCGTAAGAGGGAGTTGGGACCCAGATCTTTCCAGTTAATCACACAACAAACTTAGATCATCGCAATAAAGCAGCTCGGTTCGCTCTGACTCCTTTAGTGACCGGCTGTGCGCAGGGTCCTTCCGAGGAGCCATCTCCTCCCCGCTAGCCGCCGGGGGGGCCGCCAGCACCATGTGGGCTACCCAACTCCTGCCAGCCTTGCTACTCCATCAGCTGCTGCTGCCTCCCATCACCATCCCTGCGGCAG
Seq A exon
CCAGGAAATTGGACATTTCTGATACTGAAACATGCATAAGGAGAAGTCAAAATAAATGAAAGCAAGTTGAAACTAAGTTAAAA
Seq C2 exon
AAGGTAAAGGAAAAAGGAGAAATCCTCTTCATGACTATAAAAAAACAGGCGAGTTGATGCTCATCAAAGTAAACAAAACACTGGAAGTTAAAACCAAGCTGCTAAATACCACTGAGCAGTGTGCCAAGAGATGCAGCAGGAACAAAGGCCTTTCATTCACTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002421=PAN_1=PU(50.6=73.2)
Main Inclusion Isoform:
ENSGALT00000039793fB1386
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCTACTCCATCAGCTGC
R:
TCTCTTGGCACACTGCTCAGT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]