GgaEX0012374 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2440245-2449833:+
Coord C1 exon
chr17:2440245-2440801
Coord A exon
chr17:2443319-2443360
Coord C2 exon
chr17:2449656-2449833
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCAGCTTTTTCTCTGTTTAGGAA
3' ss Score
9.59
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
AAATGGCTGTAGACGGTGAAACCAACGGTTCCTGTGAGCACGGCGAGGCTGGGAGCCACCCAAACCCAGCAAAAAACACTCAGGACAATACGAAAGTGAGCCAGCAGGACTCTAGTACTAAATTAAATAGGATAGCAGAAAATGGCATTTCTGAACGAGATGGTGAGACTGGGAAGCAAAACCATATGAAAGCTAATGACTTCACACAGACTTCTCTAACAGGGAGCAATGGATATATTCTAACCAAGCAGATGGCGCAGGAGCAACCTCTAAGGACTACCAGCACCTTTGCTTCTCTCACTGGCCATGCTGCAAAAACCCTTCCAGGAGGAGCAAGCAAAGGGAGAACTGTGGGCACCTTTTCTCAGATGCAAGCCACGATGCCAACCAAGCTCGGGGAGGGCAGTAAGGACATGGATGCTAAAAAAGCCACTGCTGCTAACGCTGAAGTCAAGGTCCACAGAGCACGGAAGACAATGCCTAAACCCACCCCTAGCCTG
Seq A exon
GAATTGCTTCCTGAATTGGGATCGAAGCTGAATCTGAAACAG
Seq C2 exon
CATGCAAGTAAAGACCCCAAAGATGGGAGAGACAGCAGAGATCAAAAAGAATCTAAAGAGGAAGGCAACAAAAACATCCTGGAGTTTGGGAAGCCGTTGCCATTGCCCTCTCTCCCGGGCCTTCACCAGTCACTACCTCAGAACCAGAGCTATGTGGCCACCTCGAAGTCGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCACGGAAGACAATGC
R:
GGCTTCCCAAACTCCAGGATG
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]