GgaEX0012866 @ galGal3
Exon Skipping
Gene
ENSGALG00000008818 | F1NPG2_CHICK
Description
NA
Coordinates
chr7:14896751-14899146:-
Coord C1 exon
chr7:14899133-14899146
Coord A exon
chr7:14896983-14897060
Coord C2 exon
chr7:14896751-14896878
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTTTCACTTTATCCCCAGATC
3' ss Score
9.15
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
CGCAGTGTCAGCAG
Seq A exon
ATCTCTCTGGGAACTGAGATTCCACGAACAGTACCATTAAGATTTTTTCAGGACTTCAGAAGTGGTTGTGCATGCAAT
Seq C2 exon
ATCAAGATGTCTAAAAAAATCCATGGAGGGTCTGTTGTGGAGATGCAAGGAGATGAAATGACACGCGTCATCTGGGAATTAATTAAAGAAAAGCTGATTTTTCCTTATGTAGATCTGGATTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008818-'0-1,'0-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(8.1=74.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]