GgaEX0012871 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1948798-1950748:-
Coord C1 exon
chr17:1950574-1950748
Coord A exon
chr17:1949673-1949773
Coord C2 exon
chr17:1948798-1948854
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTCACCTATTCTGCCATAGGAG
3' ss Score
9.3
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AGGACAGCTCTGTAGTCCAGGTTCCACGTGCTCCAAGAGCCATCTGCCTTTATTTGTGCTGGTAGTTTGTGCCATTCAGACGGAGCTGTAGTCACAACTCAAGATGCCCCTTTTCTTCCGTAAGAAGAAACCCAGTGAAGATGCTCGGAAGCGCCTTGAATACCAAATGTGCCTG
Seq A exon
GAGCTGCGGACCAGTGCTGACATGGGGAATCTTCTGTGTTCTACCCTAGAGGCAGCTGCATTTTAGGAATGCTAATATTATTGCTGTTGGACATCAGTAAG
Seq C2 exon
GCAAAAGAGGCTGGTGCCGATGATGTTCTTGACATATCCAAATGTGAACTGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTCTGTAGTCCAGGT
R:
ACAGTTCACATTTGGATATGTCAAGA
Band lengths:
226-327
Functional annotations
There are 0 annotated functions for this event