GgaEX0013184 @ galGal4
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr6:27279363-27280132:+
Coord C1 exon
chr6:27279363-27279418
Coord A exon
chr6:27279619-27279778
Coord C2 exon
chr6:27280025-27280132
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCATTCAACGTACTCCTCAGTGA
3' ss Score
4.55
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ACTGAAAAGAGTCTCAGTAAAACACCCATCCAGATGCTTCCGAACCGTATGTACAG
Seq A exon
TGACCTGGATGAAGGCACAGAGTGCACTCAGCAAGTTTATTGATACCAAATTGGGTGGAGTGGCATATACACTTGAGGACTGCGCTGCAATTCAGAGAGACCTTGACAGACTGGAGATGTGGGCAGAGAAGAATGTAATGAAGAATGTATTTACACACAT
Seq C2 exon
ACCCTTGTGACTCCCAGCCATGCCAGAATGGGGGTACATGTGTCCCAGAGGGACTGGACAAGTACCACTGCCTGTGCCCAGTGGGATATGGAGGAGGCACACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980_MULTIEX1-6/10=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(5.6=10.0)
A:
NO
C2:
PF0000822=EGF=PD(91.7=89.2)
Main Inclusion Isoform:
ENSGALT00000014609fB1497
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAAGAGTCTCAGTAAAACACCC
R:
ACAGTGTGTGCCTCCTCCATA
Band lengths:
162-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]