GgaEX0013378 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE64_random:14879-17592:+
Coord C1 exon
chrE64_random:14879-15193
Coord A exon
chrE64_random:16313-16627
Coord C2 exon
chrE64_random:17278-17592
Length
315 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCAACCCACCTTTAGATC
3' ss Score
8.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACCAACGCAAGTACGTCTGGTAAATGGCTCCAGCCGCTGCTCAGGGAGAATTGAGGTACACCACAACCAGCGCTGGGGGACAGTGTGTGACGATGGCTGGGACTTGGCTGATGCAGAAGTGGTGTGCAGGCAGCTGGGCTGTGGGAAAGCGGTGTCAGCTCCTGGCAAAGCTATGTTTGGGCAGGGACACGATCCTGTGTGGCTGGATGAGGTGAACTGCATGGGGACAGAAGGGGCCATCACTGAGTGTAACTTGAAGCACTGGGGAGACCATAACTGCAAGCATGATGAAGATGCTAGTGTTGTGTGTTCAG
Seq A exon
ATCCTACAGAGTTGCGGCTGGTGAATGGCCCAAACCGCTGTGCTGGTCGAGTTGAGGTGCTTCATCATGAGCAGTGGGGAACTGTCTGTGACAATGACTGGGGCATGGAGCATGCAAAAGTGGTGTGCCGGCAGCTGGGCTGTGGCACTCCAATATATGCTCCAGGCTGGGCTAGGTTTGGCAGAGGCTATGACCCCATTTGGCTGGAGAAAGTGATCTGCTCAGGAATGGAGTCTGCCCTTAGTGAGTGCACAGTCCAGTCATGGGGACAACACAGCTGTCACCATGGGGAAGATGCCAGCGTGGTGTGCACAG
Seq C2 exon
ATCCAATGGCAGTCCAGCTGGTGAATGGCCCAAGCCGCTGTGCTGGGAGAGTCGAGGTGCTGGAGCGACACCAATGGGGGACAGTGTGCGATGACAACTGGGACATAAGAGATGCCAACGTTGTGTGCTGGCAGCTAGGCTGTGGTGTGGCCATTGCAGCTCCTGGCTTGGCTCACTTTGGTCGGGGAAGTGGTCCCATCTGGCTGTCTGAAGTCAACTGCACAGGGACAGAAGATAGCCTCTCCAAATGCAGGGCCAGGCCTAAAGGAGTCACTGGGTGTCACCACGGAGAAGATGCCAGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGTGAACTGCATGGG
R:
TCTGTCCCTGTGCAGTTGACT
Band lengths:
342-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]