GgaEX0013724 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSQ0]
Coordinates
chr7:16849195-16850489:-
Coord C1 exon
chr7:16850415-16850489
Coord A exon
chr7:16850065-16850125
Coord C2 exon
chr7:16849195-16849348
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTACCTTTTCAGTGA
3' ss Score
10.95
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CCACCGTTTGTCATGGAGAAGTGGATCGTGGGGATCGAAGAACACCAGTCTGTAGAATGTATTGTTACCTATGAG
Seq A exon
TGAAGTGCTAATTAGGAGAGCTGAGGAGCAACAGGAGAAGAAAGAGAATGATAAGTCAAAA
Seq C2 exon
CAGAGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344-'35-42,'35-41,36-42
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTGGATCGTGGGGAT
R:
TGTGCTTTCACCTTGCTCCAG
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]