GgaEX0013725 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:18632359-18638209:-
Coord C1 exon
chr7:18638059-18638209
Coord A exon
chr7:18636378-18636639
Coord C2 exon
chr7:18632359-18632695
Length
262 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTTGTATCTTCACAGGTT
3' ss Score
9.36
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
Seq A exon
GTTGGCTCTGCCGCAGTAAGCCAAGCTGCTTTCATTTTTTTGTGGCGAGCGGTGGGAGAGCTTGTCTGTCCCTCTGGCACACGGAGGAGTTGCACGAAGTCACTAATGTATTGGCTGCACCCAAGTGAATAGGCACAGTTCAGAGGAAATGGGTTACCAGCCAGCGTGAAAGCTGCGCCTCAGCTCTAGCAAATCTCCCGGCCTGTCTCCTTACCAGATCACCTACCCCAGGTTTAAAACAACACCAAATCCAAGCACAAAG
Seq C2 exon
GCATTGACAGCCAGTGGATGCAGACGCTGCGCATGCACCAGATAGCCAAAGCCATTTCCCTGCAGCACGGCGACCCGCACAGCCCCACCACCGTCTCGCACTACCTGCCCTACCTGCAGAGCCAGGACTCCTATGCTGCTGCCGTGAGGCGGACGCGCGGGCCCGTCAATTACCACTACACCTCCATCAGCCACTCCAGGAACTCCTCTCCCCTCTCGCACAGTTTGGTGAGAAACCTATCGAGCCTGCACATCAACTCAAAGGGCAGCAGCACTTCCAGCACGGCGTCGGACACCGCTTCAGAAAGGGACAGGTCCACGGGCAAGGCCAGGAACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCACGGAGCAGGTCTGTC
R:
TGCCCTTTGAGTTGATGTGCA
Band lengths:
292-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]