GgaEX0014112 @ galGal3
Exon Skipping
Gene
ENSGALG00000009551 | DYNC1I2
Description
NA
Coordinates
chr7:19411382-19413090:-
Coord C1 exon
chr7:19412938-19413090
Coord A exon
chr7:19412766-19412865
Coord C2 exon
chr7:19411382-19411499
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCCGTAGGCCGCCGCCTGTCAGC
3' ss Score
-32.82
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TCGGAGCCGCGTCGTCGGCGCTCGGCAGAAGGGGCGCGGCGTTGAAGCTTCTGAAGGCGCCCACCACCTTCTCGCGTCGCTACGCGCCCGTTCCCGAGTGAATTCCTGCCCCGTCGCGTTGCGTTGAAGCCTCTGCGTCCTTCCGCAGCTGCC
Seq A exon
AGCTGCCGCCGCCTTTGTGGAGCTGGCGGAAGCGGAGCGGGCGCTGGGCCGAGCCGAGGGCGGAGGGCGCGGAGCTGAGCTGAGCGGAACCCTCCGGCAG
Seq C2 exon
TGTTTCAGTCATGTCTGACAAAAGCGAACTGAAGGCGGAGTTGGAGCGCAAGAAGCAGCGATTGGCTCAGATCAGAGAGGAGAAGAAAAGAAAGGAGGAAGAAAGAAAGAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTTGAAGCTTCTGAAGG
R:
TCTTTCTTTCTTCCTCCTTTCTTTTC
Band lengths:
227-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]