GgaEX0014553 @ galGal3
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20114321-20116205:+
Coord C1 exon
chr7:20114321-20114807
Coord A exon
chr7:20115932-20115979
Coord C2 exon
chr7:20116091-20116205
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATGTTTTTCTGTAGGAA
3' ss Score
10.99
5' ss Seq
AAAGTACTT
5' ss Score
1.73
Exon sequences
Seq C1 exon
TTTTCTAAAATCTAGTGTCATACCTTCTGATACTGCTGCAATAATTCGCACGCTGGCTATTCTTCCATCCTCTCAAGTGGAAGAAGTCATTATAAACAAAGCAACAGCAGTTCTACCTCAATGCAGGCTCCAGGACCTCAGTTGCATTGCTACAGCTCTTGTCAAATGGAATCATTATGACAAGCTGCACTGGCAAAACACTTCTCAACTACACGTAAAGCTTCTGCAAAAAGTAAATGACTGTGGATTTCAGAGGCTTCAGAAAGCCAGGAACTTAAATCTCCTGTTGGAAGAACTCACACATGTGAATGGAGAGTGGTTGCAGGAAGTCATCAGTGAGGAGACTGTGGCTGCATGTCAGCGTTTGATAGATCATGTAACACAGGCAAATGTGTTACAGTTGTCTATTTTTCTCATGAAAACAAACCACCGCTGTCCTTCGTTACTTGACAGAATAGCATCTGTGACTGTTGAAAATATAAACAAG
Seq A exon
GAAAAGTTGAGGACCAGAAAAAAACAAAAACACAAAAAAACTGAAAAA
Seq C2 exon
ATCCACCCACTGGAAATGTATTTCATTCTCCATCTTTTCTCTGTTCTGAACTATGATCCTCCTGCCAATGAAGAGTTCTTTCAGAGTTGTATCCAACATCTGACTTCTAACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0674310=FAST_1=PU(46.5=84.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAAACCACCGCTGTCCTT
R:
GAACTCTTCATTGGCAGGAGGA
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event