GgaEX0014562 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20143450-20144230:-
Coord C1 exon
chr7:20144148-20144230
Coord A exon
chr7:20143596-20143701
Coord C2 exon
chr7:20143450-20143515
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCCTGGTATTAAAGAAA
3' ss Score
2.53
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACAAATGAAAATGAGACCTGGAGAAGTCCTTATAGACTGCCTGGAGTCCATTGAAGATACCAAAGGAAACAATGGAGACAGAG
Seq A exon
AAAAAATTAGGGGAGTAGGAGACGATTAGAGGTTGTCCTGCGGGGATATCCTGCTTTTCTTCTCCCTACCAAGAGGAAGGAATATTATGGTGTTGCAAAACTAGAG
Seq C2 exon
GTAGACTGCTTGTGACAAACTTAAGGATTATTTGGCGCTCATTGTCATTGCCCAGAGTTAATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.259 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(59.6=100)
A:
PF072896=DUF1448=PD(8.5=40.0)
C2:
PF072896=DUF1448=FE(6.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGAAAATGAGACCTGGAGA
R:
GAGATTAACTCTGGGCAATGACA
Band lengths:
148-254
Functional annotations
There are 0 annotated functions for this event