GgaEX0015165 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29680438-29682147:-
Coord C1 exon
chr3:29682031-29682147
Coord A exon
chr3:29681899-29681957
Coord C2 exon
chr3:29680438-29681689
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATTGCCATTGTGCCCTCCAGGGT
3' ss Score
7.46
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTTCAAGCTGAATAACAAGCTGCATCAGGTGGTGGTTGCCCGTTACGCAGATGCTGAGACGGGCGTGGACTTCGACAACTTTGTCTGCTGCCTGGTGAAGCTGGAGACAATGTTCA
Seq A exon
GGTTCTTCCACAGCATGGATCGTGATGGCACTGGCACCGCTGTCATGAATCTCGCTGAG
Seq C2 exon
TGGCTGCTGCTGACAATGTGCGGCTAGGAGCCAGGACAGATGCGCTGTGACTAGGACGCTCCAGCAGGCCAGGCCACCTCCAAGTGCCTCGCTTCAGGTCCATGGACACAGGATAATCTCCCTCCTCTTGCTCCATCCTATGCTGAGCCACCAGCCCTGCCTGTCAGCACGCCTCGCTCCACCCTCACCCATGGAGCATTTTGCAGGGGGCAAGGCAGGCAGGGGCTGCCCTTCTCCTTTTCTGGGCTGGGCTTGCTTTCCACCCTTCTCCTCCTCTTGTCCCACCCCAGAAGAGAAGGAGGGCAAGCAGCACGGGGAGTCTGTAGTTCACTGCACCTAGCTTTGGGGCAGCTGCTTAGAGGCCAGTGCAGGAGCAGACTGGGGGCTATCCACCCGGCAGGGAGAGGTGGGAGCTGTGGGGGGGAAGAGGAGGAGGACTTGTTTTGCTTGCTCCAGTGCTGTCTCATCCCCTGTGGCATGTGCTACCTGTCCCAGGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'27-29,'27-28,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTGCTGCCTGGTGAAG
R:
CTGTGTCCATGGACCTGAAGC
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]