GgaEX0015300 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40347425-40349585:-
Coord C1 exon
chr5:40349485-40349585
Coord A exon
chr5:40347849-40347971
Coord C2 exon
chr5:40347425-40347550
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTACCCTTCTACTTGGCAGATG
3' ss Score
7.14
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TGCCTGTCCCTCCAGACTCTGCCTCAACACTGAGGGCTCCTACTCCTGCATGGCTTGTGATGCTGGCTACACCGTTTCTAGAGATGGCAGCACATGTGAAG
Seq A exon
ATGTGGATGAATGTGCAGACCTTGCTATTCAGTGCCTGGGGGGAGCATGCCGGAACACACTGGGCTCCTACGAGTGCCACTGCCAGGCTGGATTCGAGCTCATCAATGGCACCGTGTGCCAAG
Seq C2 exon
ATGTGAATGAGTGCCTGAACAGTGAGATCTGCAGCCCCAATGGTGAGTGTCTCAACAGCCACGGATCCTACTTCTGCATCTGTGCGCCTGGCTTCTCCAGCTCAGATGGAGGAGTCAACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'22-29,'22-28,29-29
Average complexity
S
Mappability confidence:
93%=90=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCCCTCCAGACTCTG
R:
CTTGGCAGTTGACTCCTCCAT
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]