GgaEX0015711 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30808571-30811520:-
Coord C1 exon
chr3:30811380-30811520
Coord A exon
chr3:30810364-30810565
Coord C2 exon
chr3:30808571-30808673
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCCTGTTATTCACAGATG
3' ss Score
9.21
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCAAAAATGCTGCATGCAACAATTCTGAAGATGTTGGTTCTAGATGCTGAATCAGTCTATACCTTGACTTCTCATCCTATCTTGCTGCTCATAGCTAGGGTAGTCCTTGTGAATTCAAGGCACAAACTCTCATCTCTTCAG
Seq A exon
ATGAATGCTGTTGAATTTCAGCAACTGAGTCAGTCAGAGAGGGAGAAGATGTACTTTGTTTAGAGAATTCCCATACTACCTCCCCTCAGACTGGTGTAATTATGGGCCTCCTTCTACCCAGTGGGCATTCAATTACTTCTGGCTACAAGTTTGACTAGTAGTCCTATGGCAGCAGCTGATTAAAAACTACATTCTTCAACAG
Seq C2 exon
ACCTTACCTTGGTGGACTCTAAGATGTGTGAATATTCACCAGCAGTTGTTAGAGGAGAGATCACCTGAGCTATTTACTCTTGCCCAGACGTGTATAAGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000017153fB1823
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCATGCAACAATTCTGAAGA
R:
TTTGTCTTATACACGTCTGGGCA
Band lengths:
236-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]