GgaEX0016260 @ galGal3
Exon Skipping
Gene
ENSGALG00000010875 | F1NE25_CHICK
Description
NA
Coordinates
chr2:30045393-30052776:+
Coord C1 exon
chr2:30045393-30045556
Coord A exon
chr2:30045650-30045900
Coord C2 exon
chr2:30052448-30052776
Length
251 bp
Sequences
Splice sites
3' ss Seq
ATTGTATCTTCTCCTTCAAGGAA
3' ss Score
7.94
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
AATGTTTCTCTGGACGAAGCTACTTTAGAGTGTTTTCCATAATCTTTATAGTTACATTTCTGATTGGGTTGCTTGTTGTACTTATCATCAGGCAGATAATTCTGCAGGGAAATAGCAATAAAGTTAAATCTTCAGCTGATTACAGAGTCTCTGCGACAAAGAAG
Seq A exon
GAAAAGATGTTTTTGCCTACTGTTTGTACAAGAACAGTAACATACAGACGTGACAAACCAGAGGAAATAAATATCGACATCAGCAAGTTGCGATTAAATGAAACTTTCAAGTGTGAATTCTGAAGACAGTGTGTTTTCTGCAAATGTCTATTTCCATCATTCTCTACTTTTTAGAAGTTACCACTCTGTCAGAATCTCGTCTGTTGCTGTTTGTGTCATGCATTTTGTTGGATACTGTAACAACGTGACAT
Seq C2 exon
ATACCATTGACCAGAAAAAGGCTTGCTGCTCAAGCTCTCCAAAGAGGAATGAAACCTAAGTTACAGCCTCTAAAGCCGGAGGAGGAAAGAGATCCTTCTTTCAGCCACTTTTTTGACACCAGTCATGTAGGTGCACACTATTACAGAATTTCTCTCCCTGCATGATTCCAACTGTGGTGGGTGCAGAATTTGACCTGATAAACAGAGAGGATGGAGGGGACAAAAGTTCAGCATTAGGGGCTGCTGCATGTAAGTTATCTGCTCAGCACAGTGGTTTGAGCAAAGATCTGAATATGTGCGATGACAGCCAGAAGGCAATTGTTAGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875-'15-16,'15-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATTGGGTTGCTTGTTGT
R:
ATTCTGCACCCACCACAGTTG
Band lengths:
295-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]