GgaEX0016313 @ galGal4
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr7:18418869-18419894:-
Coord C1 exon
chr7:18419785-18419894
Coord A exon
chr7:18419202-18419271
Coord C2 exon
chr7:18418869-18418980
Length
70 bp
Sequences
Splice sites
3' ss Seq
GCTCTATTTTTTAACCACAGTCC
3' ss Score
6.61
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq A exon
TCCAAGTCTAAGTCATGGAAAAATGCTATGCTTTCTGATCAAGACACTGGCTCACGCTGGTATAAGATGG
Seq C2 exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(22.6=100)
A:
NO
C2:
PF0156916=PAP2=FE(22.6=100)
Main Inclusion Isoform:
ENSGALT00000017723fB1904
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGGGTGCATGAAACAA
R:
ACCTCACAGTGTAGCTAAGTGC
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]